BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB026F12LP1|AL428594
(724 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig439 1392 0.0
>3x_Contig439
Length = 1488
Score = 1392 bits (699), Expect = 0.0
Identities = 716/724 (98%), Gaps = 1/724 (0%)
Strand = Plus / Minus
Query: 1 atctaaaccatcctttgcctcactaatggaaatggtgtcaacatgggcattgtgcttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atctaaaccatcctttgcctcactaatggaaatggtgtcaacatgggcattgtgcttcaa 745
Query: 61 aatcaactgttctaaatacaagawagttctcttatgaggaactttttgtctaatttggac 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 744 aatcaactgttctaaatacaagaaagttctcttatgaggaactttttgtctaatttggac 685
Query: 121 gtttgctctccatgtattagtggtataagatctagcacagtccggacattgcatggcaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gtttgctctccatgtattagtggtataagatctagcacagtccggacattgcatggcaat 625
Query: 181 caccacatattccacttcaaatgtttgctggataatagtgttagccatagcttcaccttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caccacatattccacttcaaatgtttgctggataatagtgttagccatagcttcaccttg 565
Query: 241 aacggtcaatttgacccggatacgtctagaatgaggttcggtccagataaatgatgcatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aacggtcaatttgacccggatacgtctagaatgaggttcggtccagataaatgatgcatc 505
Query: 301 cactaatcgaactttgtttaagcctttcaaacgacgtaaacacaacgccaaaagttcacg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cactaatcgaactttgtttaagcctttcaaacgacgtaaacacaacgccaaaagttcacg 445
Query: 361 agattccaaagaagccctaatccattggcttggtggttgcaagaacctctcacagtttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agattccaaagaagccctaatccattggcttggtggttgcaagaacctctcacagtttct 385
Query: 421 acagadaganacattagcctctctgggaataccttctgtaatatcgacattcaacttaat 480
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acagaaagaaacattagcctctctgggaataccttctgtaatatcgacattcaacttaat 325
Query: 481 acagtcgtaacacataactagccctgaggacccatccataggcacaccacaactgctaca 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 acagtcgtaacacataactagccctgaggacccatccataggcacaccacaactgcaaca 265
Query: 541 tagcactgtagcatgctgatgttgcatgtgattctgatctwacggagtgtgaattcatcg 600
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 264 tagcactgtagcatgctgatgttgcatgtgattctgatctaacggagtgt-aattcatcg 206
Query: 601 agttcggtggatacttctgcccttgctggaatacctatwatgcagacattaatcagcttt 660
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 205 agttcggtggatacttctgcccttgctggaatacctataatgcagacattaatcagcttt 146
Query: 661 caagcactatcagactgtgcaagaacaagatgcgatgagatgagctttctcaaaattttt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 caagcactatcagactgtgcaagaacaagatgcgatgagatgagctttctcaaaattttt 86
Query: 721 ytta 724
|||
Sbjct: 85 ctta 82
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4480
Number of Sequences: 1807
Number of extensions: 4480
Number of successful extensions: 213
Number of sequences better than 1.0e-20: 1
length of query: 724
length of database: 10,358,551
effective HSP length: 16
effective length of query: 708
effective length of database: 10,329,639
effective search space: 7313384412
effective search space used: 7313384412
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.1 bits)